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[10 Jun 2008 | 16 Comments | 16 views]

I spent today at an interesting meeting at Talis headquarters where there was a wide range of talks. Most of the talks were liveblogged by Andy Powell and also by Owen Stephens (who has written a much more comprehensive summary of Andy’s talk) and there will no doubt be some slides and video available …

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[8 Apr 2008 | 6 Comments | 7 views]

And other big words I learnt from mathematicians…

The observant amongst you will have realised that the title of my previous post pushing a boat out into the area of semantics and RDF implied there was more to come. Those of you who followed the reaction will also …

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[30 Mar 2008 | Comments Off | 16 views]

Frank Gibson has continued the discussion that kicked off here and has continued here and in other places along the way. Frank’s exposition on using FuGE as a data model is very clear in what it says and does not say and some of his questions have revealed …

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[26 Mar 2008 | 2 Comments | 17 views]

This started out as a comment on Peter Murray-Rust’s response to my post and grew to the point where it seemed to warrant its own post. We need a better medium (or perhaps a semantic markup framework for Blogs?) in which to capture discussions like this, but that’s a problem for another day…

From Peter:
[…quoting …

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[26 Mar 2008 | 4 Comments | 13 views]

More on the discussion of structured vs unstructured experiment descriptions. Frank has put up a description of the Minimal Information about a Neuroscience Investigation standard at Nature Precedings which comes out of the CARMEN project. Neil Saunder’s has also made some comments on the resistance amongst the lab monkeys to think about structure. Lots …

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[25 Mar 2008 | 8 Comments | 10 views]

Frank Gibson of peanutbutter has left a long comment on my post about data models for lab notebooks which I wanted to respond to in detail. We have also had some email exchanges. This is essentially an incarnation of the heavyweight vs lightweight debate when it comes to tools and systems for description of …

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[23 Mar 2008 | 12 Comments | 10 views]

‘No data model survives contact with reality’ – Me, Cosener’s House Workshop 29 February 2008
This flippant comment was in response to (I think) Paolo Missier asking me ‘what the data model is’ for our experiments. We were talking about how we might automate various parts of the blog system but the point I was …

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[5 Nov 2007 | 3 Comments | 7 views]

This morning I got to sit down with Bill Flanagan, Barry Canton, Austin Che, and Jason Kelly and throw some ideas around about electronic notebooks. This is an approximate summary of some of the points that came out of this. This may be a bit of brain dump so I might re-edit later.

Neither …

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[29 Oct 2007 | 2 Comments | 12 views]

Given that most people reading this probably also read the UsefulChem Blog I would guess that they have already figured out I am visiting the States. However as I am now here and due to jet lag have a few hours to kill before breakfast I thougt I might detail the intinerary for anyone …

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[16 Oct 2007 | 10 Comments | 74 views]

I am in the process of preparing the talk I am giving at Drexel next month and have been going over the early versions of our Lab Blog and getting a clearer picture of how our usage has evolved. I wanted to record this so will write some notes as I go.

To re-iterate our …