The serious amateur and the cult of ignorance

The opening of the six-part fugue from The Musical Offering, in Bach’s handAmongst the other things that I do I am a fairly serious amateur musician. I sing regularly and irregularly in choirs, have occassionally done some solo vocal work, conduct a bit, and in the past written fairly substantial pieces of music for orchestra and choir. When I started university I made a choice between doing music or doing science. Like a lot of other scientists I suspect I chose to go down the science route because it is much easier to be an amateur musician than and amateur scientists. I don’t regret the decisions I made then but like anyone I do think back to what might have been.

One of the criticisms of open practice in science and Open Notebook Science in particular is that we open up ourselves to harassment by ‘nutjobs’, ‘ignorant plebs’, and assorted other people who don’t appreciate a) how clever we are or b) how busy we are. There are two sides to this argument with merits on both. It is possible to get bogged down continually dealing with people who genuinely wish to explain to you how universal crystal harmonics explain the periodicity of the elements, or how their understanding of the interstitial spiritual lamina demonstrates the inadvisability of human cloning. There is no getting over the fact that there are nutters out there. On the other hand we do little to encourage the amateur scientist beyond allowing them occasional access to our hallowed existence through TV, NewScientist, and Wired. I wondered whether an exploration of the parallels between amateur music and amateur science might be interesting. I should note that I am using the term professional in rather a loose way here, not to mean whether someone that gets paid to do something, but someone who can devote the majority of their time to a specific pursuit, be that music, science, or anything else. Continue reading “The serious amateur and the cult of ignorance”

Protocols for Open Science

interior detail, stata center, MIT. just outside science commons offices.

One of the strong messages that came back from the workshop we held at the BioSysBio meeting was that protocols and standards of behaviour were something that people would appreciate having available. There are many potential issues that are raised by the idea of a ‘charter’ or ‘protocol’ for open science but these are definitely things that are worth talking about. I thought I would through a few ideas out and see where they go. There are some potentially serious contradictions to be worked through. Continue reading “Protocols for Open Science”

The economic case for Open Science

I am thinking about how to present the case for Open Science, Open Notebook Science, and Open Data at Science in the 21st Century, the meeting being organised by Sabine Hossenfelder and Michael Nielsen at the Perimeter Institute for Theoretical Physics. I’ve put up a draft abstract and as you might guess from this I wanted to make an economic case that the waste of resources, both human and monetary is not something that is sustainable for the future. Here I want to rehearse that argument a bit further as well as explore the business case that could be presented to Google/Gates Foundation as a package that would include the development of the Science Exchange ideas that I blogged about last week. Continue reading “The economic case for Open Science”

Somewhat more complete report on BioSysBio workshop

The Queen's Tower, Imperial CollegeImage via Wikipedia

This has taken me longer than expected to write up. Julius Lucks, John Cumbers, and myself lead a workshop on Open Science on Monday 21st at the BioSysBio meeting at Imperial College London.  I had hoped to record screencast, audio, and possibly video as well but in the end the laptop I am working off couldn’t cope with both running the projector and Camtasia at the same time with reasonable response rates (its a long story but in theory I get my ‘proper’ laptop back tomorrow so hopefully better luck next time). We had somewhere between 25 and 35 people throughout most of the workshop and the feedback was all pretty positive. What I found particularly exciting was that, although the usual issues of scooping, attribution, and the general dishonestly of the scientific community were raised, they were only in passing, with a lot more of the discussion focussing on practical issues. Continue reading “Somewhat more complete report on BioSysBio workshop”

BioSysBio conference and workshop

Tomorrow myself and a few of the usual suspects, who I have finally met in person are giving a workshop on ‘Open Science’ as part of BioSysBio 2008. If anyone else who I haven’t met yet is about at the meeting then feel free to introduce yourself, even if you can’t make it to the workshop. The workshop abstract is up on OpenWetWare if you want to have a look. I hope to be able to record screencast and video of the session to make it available to all of you who can’t make it. If you want to make comments in advance or raise any issues then drop a comment here or in the usual places.

More on FuGE and data models for lab notebooks

Frank Gibson has posted again in our ongoing conversation about using FUGE as a data model for laboratory notebooks. We have also been discussing things by email and I think we are both agreed that we need to see what actually doing this would look like. Frank is looking at putting some of my experiments into a FUGE framework and we will see how that looks. I think that will be the point where we can really make some progress. However here I wanted to pick up on a couple of points he has made in his last post. Continue reading “More on FuGE and data models for lab notebooks”

The science exchange

How do we actually create the service that will deliver on the promise of the internet to enable collaborations to form as and where needed, to increase the speed at which we do science by enabling us to make the right contacts at the right times, and critically; how do we create the critical mass needed to actually make it happen? In another example of blog based morphic resonance there has been a discussion a discussion over at Nature Networks on how to enable collaboration occurred almost at the same time as Pawel Szczeny was blogging on freelance science. I then hooked up with Pawel to solve a problem in my research; as far as we know the first example of a scientific collaboration that started on Friendfeed. And Shirley Wu has now wrapped all of this up in a blog post about how a service to enable collaborations to be identified might actually work which has provoked a further discussion. Continue reading “The science exchange”

Bursty science depends on openness

An example of a social network diagram.Image via Wikipedia

There have been a number of interesting discussions going on in the blogosphere recently about radically different ways of practising science. Pawel Szczesny has blogged about his plans for freelancing science as a way of moving out of the rigid career structure that drives conventional academic science. Deepak Singh has blogged a number of times about ‘bursty science‘, the idea that projects can be rapidly executed by distributing them amongst a number of people, each with the capacity to undertake a small part of the project. Continue reading “Bursty science depends on openness”

We still have a way to go folks…

The mainstream media has a lot of negative things to say about blogs and user based content on the web. Most of them can be discounted but there is one that I think does need to be taken seriously. The ability of communities to form and to some extent to close around themselves and to simply reinforce their own predjudices is a serious problem and one that we need to work against. This week I had two salutary lessons that reminded me that while the open research community is growing and gaining greater recognition, we remain a pretty marginal fringe group. Continue reading “We still have a way to go folks…”