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Articles tagged with: open data

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[18 Sep 2008 | 6 Comments | ]

So a bit of a first for me. I can vaguely claim to have contributed to two things into the print version of Nature this week. Strictly speaking my involvement in the first, the ‘From the Blogosphere‘ piece on the Science Blogging Challenge, was really restricted to discussing the idea (originally from Richard Grant I believe) and now a bit of cheerleading and ultimately some judging. The second item though I can claim some credit for in as much as it is a Q&A with myself and Jean-Claude Bradley that …

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[31 Aug 2008 | 4 Comments | ]

I am currently sitting at the dining table of Peter Murray-Rust with Egon Willighagen opposite me talking to Jean-Claude Bradley. We pulling together sets of data from Jean-Claude’s UsefulChem project into CML to make it more semantically rich and do a bunch of cool stuff. Jean-Claude has a recently published preprint on Nature Precedings of a paper that has been submitted to JoVE. Egon was able to grab the InChiKeys from the relevant UsefulChem pages and passing those to CDK via a script that he wrote on the spot (which …

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[17 Aug 2008 | 18 Comments | ]

One of the many great pleasures of SciFoo was to meet with people who had a different, and in many cases much more comprehensive, view of managing data and making it available. One of the long term champions of data availability is Professor Helen Berman, the head of the Protein Data Bank (the international repository for biomacromolecular structures), and I had the opportunity to speak with her for some time on the Friday afternoon before Scifoo kicked off in earnest (in fact this was one of many somewhat embarrasing situations …

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[15 Aug 2008 | Comments Off on Southampton Open Science Workshop 31 August and 1 September | ]

An update on the Workshop that I announced previously. We have a number of people confirmed to come down and I need to start firming up numbers. I will be emailing a few people over the weekend so sorry if you get this via more than one route. The plan of attack remains as follows:
Meet on evening of Sunday 31 August in Southampton, most likely at a bar/restaurant near the University to coordinate/organise the details of sessions.
Commence on Monday at ~9:30 and finish around 4:30pm (with the option of discussion …

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[11 Aug 2008 | 4 Comments | ]

I am too tired to write anything even vaguely coherent. As will have been obvious there was little opportunity for microblogging, I managed to take no video at all, and not even any pictures. It was non-stop, at a level of intensity that I have very rarely encountered anywhere before. The combination of breadth and sharpness that many of the participants brought was, to be frank, pretty intimidating but their willingness to engage and discuss and my realisation that, at least in very specific areas, I can hold my own …

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[29 Jul 2008 | 10 Comments | ]

The speaker had started the afternoon with a quote from Ian Rogers, ‘Losers wish for scarcity. Winners leverage scale.’ He went on to eloquently, if somewhat bluntly, make the case for exposing data and discuss the importance of making it available in a useable and re-useable form. In particular he discussed the sophisticated re-analysis and mashing that properly exposed data enables while excoriating a number of people in the audience for forcing him to screen scrape data from their sites.
All in all, as you might expect, this was music to …

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[28 Jul 2008 | 4 Comments | ]

Pedro has written a thoughtful post detailing arguments he has received against Open Practice in science. He makes a good point that as the ideas around Open Science spread there will inevitably be a backlash. Part of the response to this is to keep saying – as Pedro does and as Jean-Claude, Bill Hooker and others have said repeatedly that we are not forcing anyone to take this approach. Research funders, such as the BBSRC, may have data sharing policies that require some measure of openness but, at the end …

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[18 Jul 2008 | 11 Comments | ]

Written on the train on the way from Barcelona to Grenoble. This life really is a lot less exotic than it sounds… 
The workshop that I’ve reported on over the past few days was both positive and inspiring. There is a real sense that the ideas of Open Access and Open Data are becoming mainstream. As several speakers commented, within 12-18 months it will be very unusual for any leading institution not to have a policy on Open Access to its published literature. In many ways as far as Open Access …

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[17 Jul 2008 | Comments Off on Policy and technology for e-science – A forum on on open science policy | ]

I’m in Barcelona at a satellite meeting of the EuroScience Open Forum organised by Science Commons and a number of their partners.  Today is when most of the meeting will be with forums on ‘Open Access Today’, ‘Moving OA to the Scientific Enterprise:Data, materials, software’, ‘Open access in the the knowledge network’, and ‘Open society, open science: Principle and lessons from OA’. There is also a keynote from Carlos Morais-Pires of the European Commission and the lineup for the panels is very impressive.
Last night was an introduction and social kickoff …

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[12 Jun 2008 | 6 Comments | ]

Science commons and other are organising a workshop on Open Science issues as a satellite meeting of the European Science Open Forum meeting in July. This is pitched as an opportunity to discuss issues around policy, funding, and social issues with an impact on the ‘Open Research Agenda’. In preparation for that meeting I wanted to continue to explore some of the conflicts that arise between wanting to make data freely available as soon as possible and the need to protect the interests of the researchers that have generated data …