I have said before that I think we could benefit from the involvement of social scientists in understanding the possible cultural issues involved in the move towards more open practises. To this end we are submitting an abstract for the 4th International Meeting on e-social Science to present a ‘short paper’. I’ve put the abstract below: the deadline is next Monday (4th February). If you have any comments and/or would like to be included as an author on the paper. I am a bit pressed for time this week and …

I spent last week in Cuba. I was there on holiday but my wife (who is a chemistry academic) was on a work trip to visit collaborators. This meant I had the opportunity to talk to a range of scientists and to see the conditions they work under. One of the strong arguments for Open Science (literature access, data, methods, notebooks) is that it provides access to scientists in less priviledged countries to both peer reviewed research as well as to the details of methodology that can enable them to …

I don’t usually do New Year’s resolutions. But in the spirit of the several posts from people looking back and looking forwards I thought I would offer a few. This being an open process there will be people to hold me to these so there will be a bit of encouragement there. This promises to be a year in which Open issues move much further up the agenda. These things are little ways that we can take this forward and help to build the momentum.

I will adopt the NIH Open …

There were lots of helpful comments on my previous post as well as some commiseration from Peter Murray-Rust. Also Jean-Claude Bradley’s group is starting to face some similar issues with the combi-Ugi project ramping up. All in the week that the Science Commons Open Data protocol is launched. I just wanted to bring out a few quick points:
The ease with which new data types can be incorporated into UsefulChem, such as the recent incorporation of a crystal structure (see also JC’s Blog Post), shows the flexibility and ease provided by …

Our laboratory blog system has been doing a reasonable job of handling protocols and simple pieces of analysis thus far. While more automation in the posting would be a big benefit, this is more a mechanical issue than a fundamental problem. To re-cap our system is that every “item” has its own post. Until now these items have been samples, or materials. The items are linked by posts that describe procedures. This system provides a crude kind of triple; Sample X was generated using Procedure A from Material Z. …

The following comment was posted to the ‘About‘ page by Sharon Sonenblum from Georgia Tech. Rather than leave it there where people might not see it I thought I would bring it to the front for everyone’s attention.
‘I’m looking for some resources or direction for diving into open notebook science. I have been interested in the concept for quite some time and recently began following this blog and a few others. I am excited to see that ONS is real and growing, but I’m not sure the best places to …

So while I have been buried in the paper- and lab-work there has been quite a lot of interesting stuff going on. Pedro Beltrao has started an Open Notebook style project at Google Code which he describes in a post on Public Ramblings. This in interesting, because once again someone is using a different system as an Open Notebook. We have Wiki’s, Blogs, TeX based documents, and now, software version repositories being used. As Jean-Claude Bradley has said and we have discussed we have a lot to learn from …

The text of the proposal is now in a near complete form. I need to add references and a few others things but it is mostly in reasonable shape. If you would like to have your name included as a founder member of the network please drop me a comment on this post, email, or if I have given you editing rights then feel free to add yourself. If you do so please send or post some sort of document that I can take a version of and incorporate as …

The UK Engineering and Physical Sciences Research Council currently has a call out for proposals to fund ‘Network Activities’ in e-science. This seems like an opportunity to both publicise and support the ‘Open Science’ agenda so I am proposing to write a proposal to ask for ~£150-200k to fund workshops, meetings, and visits between different people and groups. The money could fund people to come to meetings (including from outside the UK and Europe) but could not be used to directly support research activities. The rationale for the proposal would …

In a recent post I extolled the possible virtues of Open Notebook Science in avoiding or ameliorating the risk of being scooped. I also made a virtue of the fact that being open encourages you to take a more open approach; that there is a virtuous circle or positive feedback. However much of this is very theoretical. We don’t have good case studies to point at that show that Open Notebook Science generates positive outcomes in practice. To take a more cynical perspective where is the evidence that I am …